1 Response_reg#1
5-107 aa · 103 aa · 44.4% of protein
Raw token
Response_reg:5:0.00000000037:107:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW242_RS02840
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003434415
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434415#DW242_RS02840Stable P2CS identifier used across views.
GenomeGCF_003434415Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-215 aa · 82 aa · 35.3% of protein
Raw token
LytTR:134:3.91e-18:215:88:98- Raw architecture: Response_reg:5:0.00000000037:107:107:111#LytTR:134:3.91e-18:215:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434415::NZ_QUSJ01000002.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span109486-110184Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW242_02840RefSeq proteinWP_117561351.1
Context group ID
GCF_003434415::NZ_QUSJ01000002.1::G00013Context members
DW242_RS02840
Partner locus tags
DW242_RS02840
Partner old locus tags
DW242_02840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561351.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW242_RS02840Primary locus identifier stored in the genes table.
Old locus tagDW242_02840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval109 486-110 184 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 486-110 184 ntGCF_003434415::NZ_QUSJ01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434415::NZ_QUSJ01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span109 486-110 184 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 486 nt110 184 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW242_RS02840GCF_003434415#DW242_RS02840
RRLytTRCurrent focus
109 486-110 184 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS02840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129356
Simplified PFAM architecture for RROC_1129356
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-107] | LytTR[135-216]
- Domain count: 2
- Matched identifier: RROC_1129356
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; LytTR 135-216 ; LytTR 135-216
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS02840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003434415
AssemblyASM343441v1 · Scaffoldhaploid
Genome composition4 095 829 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 62 · HK 28 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key