1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:2.11e-22:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW242_RS02560
Response regulator OmpR family
Thomasclavelia ramosa · GCF_003434415
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434415#DW242_RS02560Stable P2CS identifier used across views.
GenomeGCF_003434415Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 219 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-218 aa · 76 aa · 34.7% of protein
Raw token
Trans_reg_C:143:1.04e-23:218:77:77- Raw architecture: Response_reg:3:2.11e-22:112:111:111#Trans_reg_C:143:1.04e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434415::NZ_QUSJ01000002.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44324-44983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW242_02560RefSeq proteinWP_008792589.1
Context group ID
GCF_003434415::NZ_QUSJ01000002.1::G00011Context members
DW242_RS02560
Partner locus tags
DW242_RS02560
Partner old locus tags
DW242_02560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792589.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3EDA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3EDA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW242_RS02560Primary locus identifier stored in the genes table.
Old locus tagDW242_02560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval44 324-44 983 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 324-44 983 ntGCF_003434415::NZ_QUSJ01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434415::NZ_QUSJ01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span44 324-44 983 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 324 nt44 983 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW242_RS02560GCF_003434415#DW242_RS02560
RROmpRCurrent focus
44 324-44 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767546
Simplified PFAM architecture for RROC_1767546
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[144-218]
- Domain count: 2
- Matched identifier: RROC_1767546
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 144-218 ; Trans_reg_C 144-218
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003434415
AssemblyASM343441v1 · Scaffoldhaploid
Genome composition4 095 829 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 62 · HK 28 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key