1 Response_reg#1
4-123 aa · 120 aa · 48.4% of protein
Raw token
Response_reg:4:0.00000000274:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW242_RS00960
Response regulator LytTR family
Thomasclavelia ramosa · GCF_003434415
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434415#DW242_RS00960Stable P2CS identifier used across views.
GenomeGCF_003434415Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage212 / 248 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 LytTR#2
151-242 aa · 92 aa · 37.1% of protein
Raw token
LytTR:151:8.63e-18:242:97:98- Raw architecture: Response_reg:4:0.00000000274:123:121:111#LytTR:151:8.63e-18:242:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434415::NZ_QUSJ01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span162096-162842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW242_00960RefSeq proteinWP_117517393.1
Context group ID
GCF_003434415::NZ_QUSJ01000001.1::G00003Context members
DW242_RS00960
Partner locus tags
DW242_RS00960
Partner old locus tags
DW242_00960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117517393.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7K7S1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7K7S1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW242_RS00960Primary locus identifier stored in the genes table.
Old locus tagDW242_00960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval162 096-162 842 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span162 096-162 842 ntGCF_003434415::NZ_QUSJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434415::NZ_QUSJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span162 096-162 842 nt747 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
162 096 nt162 842 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW242_RS00960GCF_003434415#DW242_RS00960
RRLytTRCurrent focus
162 096-162 842 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434225#DW761_RS08025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746230
Simplified PFAM architecture for RROC_0746230
PFAM domain coverage: 206 / 248 aa (83.1%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[152-242]
- Domain count: 2
- Matched identifier: RROC_0746230
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 152-242 ; LytTR 152-242
Cluster members and taxonomy
Representative gene: GCF_003434225#DW761_RS08025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003434415
AssemblyASM343441v1 · Scaffoldhaploid
Genome composition4 095 829 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 62 · HK 28 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key