1 HAMP#1
152-219 aa · 68 aa · 14.5% of protein
Raw token
HAMP:152:0.0000000000282:219:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW242_RS00920
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_003434415
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434415#DW242_RS00920Stable P2CS identifier used across views.
GenomeGCF_003434415Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 470 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-311 aa · 66 aa · 14.0% of protein
Raw token
HisKA:246:0.00000000446:311:66:643 HATPase_c#3
358-445 aa · 88 aa · 18.7% of protein
Raw token
HATPase_c:358:7.39e-18:445:88:109- Raw architecture: HAMP:152:0.0000000000282:219:68:69#HisKA:246:0.00000000446:311:66:64#HATPase_c:358:7.39e-18:445:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434415::NZ_QUSJ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153496-155563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW242_00920RefSeq proteinWP_117517381.1
Context group ID
GCF_003434415::NZ_QUSJ01000001.1::G00001Context members
DW242_RS00920DW242_RS00925
Partner locus tags
DW242_RS00920DW242_RS00925
Partner old locus tags
DW242_00920DW242_00925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117517381.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7K7S3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7K7S3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW242_RS00920Primary locus identifier stored in the genes table.
Old locus tagDW242_00920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval153 496-154 908 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span153 496-155 563 ntGCF_003434415::NZ_QUSJ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434415::NZ_QUSJ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span153 496-155 563 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 496 nt155 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW242_RS00920GCF_003434415#DW242_RS00920
HKClassicCurrent focus
153 496-154 908 nt · Reverse (-)
DW242_RS00925GCF_003434415#DW242_RS00925
RROmpR
154 895-155 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434225#DW761_RS07985Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719372
Simplified PFAM architecture for HKOC_1719372
PFAM domain coverage: 218 / 470 aa (46.4%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[170-220] | HisKA[247-310] | HATPase_c[358-460]
- Domain count: 3
- Matched identifier: HKOC_1719372
- Positioned domains: HAMP 170-220 ; HisKA 247-310 ; HATPase_c 358-460
Cluster members and taxonomy
Representative gene: GCF_003434225#DW761_RS07985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_003434415
AssemblyASM343441v1 · Scaffoldhaploid
Genome composition4 095 829 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 62 · HK 28 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key