1 HAMP#1
173-242 aa · 70 aa · 14.8% of protein
Raw token
HAMP:173:0.00000000000233:242:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS15485
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS15485Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 474 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-313 aa · 61 aa · 12.9% of protein
Raw token
HisKA:253:0.00000000000646:313:61:643 HATPase_c#3
360-467 aa · 108 aa · 22.8% of protein
Raw token
HATPase_c:360:1.87e-26:467:108:109- Raw architecture: HAMP:173:0.00000000000233:242:70:69#HisKA:253:0.00000000000646:313:61:64#HATPase_c:360:1.87e-26:467:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000051.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17336-19413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_15480RefSeq proteinWP_117518536.1
Context group ID
GCF_003434045::NZ_QVFK01000051.1::G00033Context members
DXA09_RS15480DXA09_RS15485
Partner locus tags
DXA09_RS15480DXA09_RS15485
Partner old locus tags
DXA09_15475DXA09_15480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117518536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS15485Primary locus identifier stored in the genes table.
Old locus tagDXA09_15480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000051.1Sequence record reported by the local genomic context database.
Genomic interval17 989-19 413 nt1 425 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 336-19 413 ntGCF_003434045::NZ_QVFK01000051.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000051.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000051.1All displayed genes belong to this local TCS context.
Neighborhood span17 336-19 413 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 336 nt19 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS15480GCF_003434045#DXA09_RS15480
RROmpR
17 336-17 989 nt · Forward (+)
DXA09_RS15485GCF_003434045#DXA09_RS15485
HKClassicCurrent focus
17 989-19 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434045#DXA09_RS15485The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1677499
Simplified PFAM architecture for HKOC_1677499
PFAM domain coverage: 223 / 474 aa (47.0%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-241] | HisKA[253-316] | HATPase_c[361-468]
- Domain count: 3
- Matched identifier: HKOC_1677499
- Positioned domains: HAMP 191-241 ; HisKA 253-316 ; HATPase_c 361-468
Cluster members and taxonomy
Representative gene: GCF_003434045#DXA09_RS15485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key