1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.09e-33:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS15480
Response regulator OmpR family
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS15480Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:7e-25:214:77:77- Raw architecture: Response_reg:3:1.09e-33:111:111:111#Trans_reg_C:142:7e-25:214:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000051.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17336-19413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_15475RefSeq proteinWP_117570476.1
Context group ID
GCF_003434045::NZ_QVFK01000051.1::G00033Context members
DXA09_RS15480DXA09_RS15485
Partner locus tags
DXA09_RS15480DXA09_RS15485
Partner old locus tags
DXA09_15475DXA09_15480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117570476.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS15480Primary locus identifier stored in the genes table.
Old locus tagDXA09_15475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000051.1Sequence record reported by the local genomic context database.
Genomic interval17 336-17 989 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 336-19 413 ntGCF_003434045::NZ_QVFK01000051.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000051.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000051.1All displayed genes belong to this local TCS context.
Neighborhood span17 336-19 413 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 336 nt19 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS15480GCF_003434045#DXA09_RS15480
RROmpRCurrent focus
17 336-17 989 nt · Forward (+)
DXA09_RS15485GCF_003434045#DXA09_RS15485
HKClassic
17 989-19 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434045#DXA09_RS15480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1854311
Simplified PFAM architecture for RROC_1854311
PFAM domain coverage: 182 / 217 aa (83.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1854311
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_003434045#DXA09_RS15480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key