1 HAMP#1
215-284 aa · 70 aa · 13.7% of protein
Raw token
HAMP:215:0.000000162:284:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS14340
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS14340Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 510 aa (47.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
289-352 aa · 64 aa · 12.5% of protein
Raw token
HisKA:289:1.29e-18:352:64:643 HATPase_c#3
397-506 aa · 110 aa · 21.6% of protein
Raw token
HATPase_c:397:5.54e-25:506:110:109- Raw architecture: HAMP:215:0.000000162:284:70:69#HisKA:289:1.29e-18:352:64:64#HATPase_c:397:5.54e-25:506:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000044.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27627-29820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_14340RefSeq proteinWP_233509614.1
Context group ID
GCF_003434045::NZ_QVFK01000044.1::G00025Context members
DXA09_RS14335DXA09_RS14340
Partner locus tags
DXA09_RS14335DXA09_RS14340
Partner old locus tags
DXA09_14335DXA09_14340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_233509614.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RBB7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RBB7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS14340Primary locus identifier stored in the genes table.
Old locus tagDXA09_14340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000044.1Sequence record reported by the local genomic context database.
Genomic interval28 288-29 820 nt1 533 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 627-29 820 ntGCF_003434045::NZ_QVFK01000044.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000044.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000044.1All displayed genes belong to this local TCS context.
Neighborhood span27 627-29 820 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 627 nt29 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS14335GCF_003434045#DXA09_RS14335
RROmpR
27 627-28 304 nt · Forward (+)
DXA09_RS14340GCF_003434045#DXA09_RS14340
HKClassicCurrent focus
28 288-29 820 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS18730Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1429151
Simplified PFAM architecture for HKOC_1429151
PFAM domain coverage: 175 / 510 aa (34.3%)
1 aa510 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[289-352] | HATPase_c[397-507]
- Domain count: 2
- Matched identifier: HKOC_1429151
- Positioned domains: HisKA 289-352 ; HATPase_c 397-507
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS18730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key