1 Response_reg#1
5-112 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:5:1.63e-37:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS13395
Response regulator OmpR family
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS13395Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-228 aa · 78 aa · 34.1% of protein
Raw token
Trans_reg_C:151:5.53e-30:228:78:77- Raw architecture: Response_reg:5:1.63e-37:112:111:111#Trans_reg_C:151:5.53e-30:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000040.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32065-34054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_13395RefSeq proteinWP_117516174.1
Context group ID
GCF_003434045::NZ_QVFK01000040.1::G00023Context members
DXA09_RS13390DXA09_RS13395
Partner locus tags
DXA09_RS13390DXA09_RS13395
Partner old locus tags
DXA09_13390DXA09_13395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117516174.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS13395Primary locus identifier stored in the genes table.
Old locus tagDXA09_13395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000040.1Sequence record reported by the local genomic context database.
Genomic interval33 365-34 054 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 065-34 054 ntGCF_003434045::NZ_QVFK01000040.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000040.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000040.1All displayed genes belong to this local TCS context.
Neighborhood span32 065-34 054 nt1 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 065 nt34 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS13390GCF_003434045#DXA09_RS13390
HKClassic
32 065-33 372 nt · Reverse (-)
DXA09_RS13395GCF_003434045#DXA09_RS13395
RROmpRCurrent focus
33 365-34 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434045#DXA09_RS13395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260948
Simplified PFAM architecture for RROC_1260948
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1260948
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_003434045#DXA09_RS13395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key