1 HAMP#1
149-221 aa · 73 aa · 16.8% of protein
Raw token
HAMP:149:0.000000178:221:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS13390
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength435 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS13390Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length435 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 435 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa435 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-290 aa · 59 aa · 13.6% of protein
Raw token
HisKA:232:0.00000000131:290:59:643 HATPase_c#3
344-435 aa · 92 aa · 21.1% of protein
Raw token
HATPase_c:344:0.00000217:435:109:109- Raw architecture: HAMP:149:0.000000178:221:73:69#HisKA:232:0.00000000131:290:59:64#HATPase_c:344:0.00000217:435:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000040.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32065-34054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_13390RefSeq proteinWP_117454679.1
Context group ID
GCF_003434045::NZ_QVFK01000040.1::G00023Context members
DXA09_RS13390DXA09_RS13395
Partner locus tags
DXA09_RS13390DXA09_RS13395
Partner old locus tags
DXA09_13390DXA09_13395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454679.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R457Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R457_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS13390Primary locus identifier stored in the genes table.
Old locus tagDXA09_13390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000040.1Sequence record reported by the local genomic context database.
Genomic interval32 065-33 372 nt1 308 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 065-34 054 ntGCF_003434045::NZ_QVFK01000040.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000040.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000040.1All displayed genes belong to this local TCS context.
Neighborhood span32 065-34 054 nt1 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 065 nt34 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS13390GCF_003434045#DXA09_RS13390
HKClassicCurrent focus
32 065-33 372 nt · Reverse (-)
DXA09_RS13395GCF_003434045#DXA09_RS13395
RROmpR
33 365-34 054 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS05900Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2123928
Simplified PFAM architecture for HKOC_2123928
PFAM domain coverage: 102 / 435 aa (23.4%)
1 aa435 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[177-220] | HisKA[233-290]
- Domain count: 2
- Matched identifier: HKOC_2123928
- Positioned domains: HAMP 177-220 ; HisKA 233-290
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS05900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key