1 HisKA#1
81-143 aa · 63 aa · 21.6% of protein
Raw token
HisKA:81:0.000000000000414:143:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS12205
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength291 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434045#DXA09_RS12205Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length291 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 291 aa (52.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa291 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-282 aa · 91 aa · 31.3% of protein
Raw token
HATPase_c:192:0.00000000586:282:99:109- Raw architecture: HisKA:81:0.000000000000414:143:63:64#HATPase_c:192:0.00000000586:282:99:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434045::NZ_QVFK01000035.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span23270-24145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_12210RefSeq proteinWP_233511350.1
Context group ID
GCF_003434045::NZ_QVFK01000035.1::G00020Context members
DXA09_RS12205
Partner locus tags
DXA09_RS12205
Partner old locus tags
DXA09_12210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233511350.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS12205Primary locus identifier stored in the genes table.
Old locus tagDXA09_12210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000035.1Sequence record reported by the local genomic context database.
Genomic interval23 270-24 145 nt876 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 270-24 145 ntGCF_003434045::NZ_QVFK01000035.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000035.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000035.1All displayed genes belong to this local TCS context.
Neighborhood span23 270-24 145 nt876 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 270 nt24 145 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA09_RS12205GCF_003434045#DXA09_RS12205
HKClassicCurrent focus
23 270-24 145 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433745#DW113_RS04335Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2895245
Simplified PFAM architecture for HKOC_2895245
PFAM domain coverage: 150 / 291 aa (51.5%)
1 aa291 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[82-143] | HATPase_c[194-281]
- Domain count: 2
- Matched identifier: HKOC_2895245
- Positioned domains: HisKA 82-143 ; HATPase_c 194-281
Cluster members and taxonomy
Representative gene: GCF_003433745#DW113_RS04335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key