1 Response_reg#1
4-116 aa · 113 aa · 23.0% of protein
Raw token
Response_reg:4:1.56e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS08245
Response regulator, unclassified
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypeunclassifiedLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS08245Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 491 aa (31.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
443-482 aa · 40 aa · 8.1% of protein
Raw token
HTH_AraC:443:0.0000000028:482:40:42- Raw architecture: Response_reg:4:1.56e-26:116:113:111#HTH_AraC:443:0.0000000028:482:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000020.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55558-58493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_08250RefSeq proteinWP_117455517.1
Context group ID
GCF_003434045::NZ_QVFK01000020.1::G00015Context members
DXA09_RS08245DXA09_RS08250
Partner locus tags
DXA09_RS08245DXA09_RS08250
Partner old locus tags
DXA09_08250DXA09_08255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117455517.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R5P3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R5P3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS08245Primary locus identifier stored in the genes table.
Old locus tagDXA09_08250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000020.1Sequence record reported by the local genomic context database.
Genomic interval55 558-57 033 nt1 476 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 558-58 493 ntGCF_003434045::NZ_QVFK01000020.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000020.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000020.1All displayed genes belong to this local TCS context.
Neighborhood span55 558-58 493 nt2 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 558 nt58 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS08245GCF_003434045#DXA09_RS08245
RRunclassifiedCurrent focus
55 558-57 033 nt · Reverse (-)
DXA09_RS08250GCF_003434045#DXA09_RS08250
HKClassic
57 030-58 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS09555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0167903
Simplified PFAM architecture for RROC_0167903
PFAM domain coverage: 191 / 491 aa (38.9%)
1 aa491 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[407-484]
- Domain count: 2
- Matched identifier: RROC_0167903
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 407-484 ; HTH_18 407-484
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS09555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key