1 HisKA#1
127-175 aa · 49 aa · 14.5% of protein
Raw token
HisKA:127:0.00000645:175:55:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS07545
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS07545Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 339 aa (47.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-331 aa · 111 aa · 32.7% of protein
Raw token
HATPase_c:221:8.69e-20:331:111:109- Raw architecture: HisKA:127:0.00000645:175:55:64#HATPase_c:221:8.69e-20:331:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000018.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32491-34172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_07550RefSeq proteinWP_117570296.1
Context group ID
GCF_003434045::NZ_QVFK01000018.1::G00010Context members
DXA09_RS07540DXA09_RS07545
Partner locus tags
DXA09_RS07540DXA09_RS07545
Partner old locus tags
DXA09_07545DXA09_07550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117570296.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS07545Primary locus identifier stored in the genes table.
Old locus tagDXA09_07550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000018.1Sequence record reported by the local genomic context database.
Genomic interval33 153-34 172 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 491-34 172 ntGCF_003434045::NZ_QVFK01000018.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000018.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000018.1All displayed genes belong to this local TCS context.
Neighborhood span32 491-34 172 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 491 nt34 172 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS07540GCF_003434045#DXA09_RS07540
RROmpR
32 491-33 156 nt · Forward (+)
DXA09_RS07545GCF_003434045#DXA09_RS07545
HKClassicCurrent focus
33 153-34 172 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434045#DXA09_RS07545The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840289
Simplified PFAM architecture for HKOC_2840289
PFAM domain coverage: 112 / 339 aa (33.0%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-332]
- Domain count: 1
- Matched identifier: HKOC_2840289
- Positioned domains: HATPase_c 221-332
Cluster members and taxonomy
Representative gene: GCF_003434045#DXA09_RS07545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key