1 HisKA#1
272-339 aa · 68 aa · 13.6% of protein
Raw token
HisKA:272:0.000000000000456:339:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS07215
Histidine kinase, Classic
Absiella sp. AM54-8XD · GCF_003434045
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS07215Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 501 aa (35.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
384-495 aa · 112 aa · 22.4% of protein
Raw token
HATPase_c:384:4.53e-25:495:112:109- Raw architecture: HisKA:272:0.000000000000456:339:68:64#HATPase_c:384:4.53e-25:495:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000017.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37607-39791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_07220RefSeq proteinWP_117451684.1
Context group ID
GCF_003434045::NZ_QVFK01000017.1::G00009Context members
DXA09_RS07210DXA09_RS07215
Partner locus tags
DXA09_RS07210DXA09_RS07215
Partner old locus tags
DXA09_07215DXA09_07220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117451684.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4Z4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4Z4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS07215Primary locus identifier stored in the genes table.
Old locus tagDXA09_07220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000017.1Sequence record reported by the local genomic context database.
Genomic interval38 286-39 791 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 607-39 791 ntGCF_003434045::NZ_QVFK01000017.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000017.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000017.1All displayed genes belong to this local TCS context.
Neighborhood span37 607-39 791 nt2 185 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 607 nt39 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS07210GCF_003434045#DXA09_RS07210
RROmpR
37 607-38 293 nt · Reverse (-)
DXA09_RS07215GCF_003434045#DXA09_RS07215
HKClassicCurrent focus
38 286-39 791 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS13545Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1469959
Simplified PFAM architecture for HKOC_1469959
PFAM domain coverage: 282 / 501 aa (56.3%)
1 aa501 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[11-115] | HisKA[272-339] | HATPase_c[386-494]
- Domain count: 3
- Matched identifier: HKOC_1469959
- Positioned domains: DUF4118 11-115 ; HisKA 272-339 ; HATPase_c 386-494
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS13545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key