1 Response_reg#1
5-99 aa · 95 aa · 41.1% of protein
Raw token
Response_reg:5:0.0000000000835:99:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS05730
Response regulator LytTR family
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypeLytTRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434045#DXA09_RS05730Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 231 aa (76.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-214 aa · 81 aa · 35.1% of protein
Raw token
LytTR:134:0.0000000125:214:86:98- Raw architecture: Response_reg:5:0.0000000000835:99:99:111#LytTR:134:0.0000000125:214:86:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434045::NZ_QVFK01000013.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33902-34597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_05735RefSeq proteinWP_117454119.1
Context group ID
GCF_003434045::NZ_QVFK01000013.1::G00006Context members
DXA09_RS05730
Partner locus tags
DXA09_RS05730
Partner old locus tags
DXA09_05735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454119.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4E1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4E1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS05730Primary locus identifier stored in the genes table.
Old locus tagDXA09_05735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000013.1Sequence record reported by the local genomic context database.
Genomic interval33 902-34 597 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 902-34 597 ntGCF_003434045::NZ_QVFK01000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000013.1All displayed genes belong to this local TCS context.
Neighborhood span33 902-34 597 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 902 nt34 597 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA09_RS05730GCF_003434045#DXA09_RS05730
RRLytTRCurrent focus
33 902-34 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS10005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168133
Simplified PFAM architecture for RROC_1168133
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-99] | LytTR[133-220]
- Domain count: 2
- Matched identifier: RROC_1168133
- Positioned domains: Response_reg 4-99 ; Response_reg 4-99 ; LytTR 133-220 ; LytTR 133-220
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS10005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key