1 Response_reg#1
1-78 aa · 78 aa · 28.0% of protein
Raw token
Response_reg:1:1.93e-19:78:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS02535
Response regulator, PleD family
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypePleDLength279 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003434045#DXA09_RS02535Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length279 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 279 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa279 aa
Domain-by-domain annotation2 items
2 GGDEF#2
108-260 aa · 153 aa · 54.8% of protein
Raw token
GGDEF:108:2.63e-46:260:161:160- Raw architecture: Response_reg:1:1.93e-19:78:78:111#GGDEF:108:2.63e-46:260:161:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003434045::NZ_QVFK01000005.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68756-71597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_02540RefSeq proteinWP_233511806.1
Context group ID
GCF_003434045::NZ_QVFK01000005.1::G00032Context members
DXA09_RS02535DXA09_RS02540
Partner locus tags
DXA09_RS02535DXA09_RS02540
Partner old locus tags
DXA09_02540DXA09_02545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233511806.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS02535Primary locus identifier stored in the genes table.
Old locus tagDXA09_02540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000005.1Sequence record reported by the local genomic context database.
Genomic interval68 756-69 595 nt840 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 756-71 597 ntGCF_003434045::NZ_QVFK01000005.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000005.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000005.1All displayed genes belong to this local TCS context.
Neighborhood span68 756-71 597 nt2 842 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 756 nt71 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA09_RS02535GCF_003434045#DXA09_RS02535
RRPleDCurrent focus
68 756-69 595 nt · Forward (+)
DXA09_RS02540GCF_003434045#DXA09_RS02540
HKCheA
69 582-71 597 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434045#DXA09_RS02535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0598518
Simplified PFAM architecture for RROC_0598518
PFAM domain coverage: 228 / 279 aa (81.7%)
1 aa279 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[2-77] | GGDEF[108-259]
- Domain count: 2
- Matched identifier: RROC_0598518
- Positioned domains: Response_reg 2-77 ; Response_reg 2-77 ; GGDEF 108-259 ; GGDEF 108-259
Cluster members and taxonomy
Representative gene: GCF_003434045#DXA09_RS02535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key