1 Response_reg#1
5-110 aa · 106 aa · 46.7% of protein
Raw token
Response_reg:5:0.00000000781:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA09_RS00655
Response regulator LytTR family
Absiella sp. AM54-8XD · GCF_003434045
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003434045#DXA09_RS00655Stable P2CS identifier used across views.
GenomeGCF_003434045Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 227 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-217 aa · 85 aa · 37.4% of protein
Raw token
LytTR:133:0.000000372:217:88:98- Raw architecture: Response_reg:5:0.00000000781:110:112:111#LytTR:133:0.000000372:217:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003434045::NZ_QVFK01000002.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1935-2618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA09_00655RefSeq proteinWP_117455636.1
Context group ID
GCF_003434045::NZ_QVFK01000002.1::G00012Context members
DXA09_RS00655
Partner locus tags
DXA09_RS00655
Partner old locus tags
DXA09_00655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117455636.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RDD4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RDD4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA09_RS00655Primary locus identifier stored in the genes table.
Old locus tagDXA09_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFK01000002.1Sequence record reported by the local genomic context database.
Genomic interval1 935-2 618 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 935-2 618 ntGCF_003434045::NZ_QVFK01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003434045::NZ_QVFK01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 935-2 618 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 935 nt2 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA09_RS00655GCF_003434045#DXA09_RS00655
RRLytTRCurrent focus
1 935-2 618 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS01030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366776
Simplified PFAM architecture for RROC_1366776
PFAM domain coverage: 192 / 227 aa (84.6%)
1 aa227 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[134-220]
- Domain count: 2
- Matched identifier: RROC_1366776
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 134-220 ; LytTR 134-220
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS01030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 279 · GCF_003434045
AssemblyASM343404v1 · Contighaploid
Genome composition4 476 074 bp · 35,5% GCAbsiella sp. AM54-8XD
Signal transduction countsGenes 80 · HK 33 · RR 45CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key