1 HAMP#1
142-211 aa · 70 aa · 15.3% of protein
Raw token
HAMP:142:0.00000000000854:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW120_RS20375
Histidine kinase, Classic
Absiella sp. AM10-20 · GCF_003433755
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433755#DW120_RS20375Stable P2CS identifier used across views.
GenomeGCF_003433755Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-300 aa · 65 aa · 14.2% of protein
Raw token
HisKA:236:0.0000000000234:300:65:643 HATPase_c#3
346-449 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:346:8.41e-19:449:108:109- Raw architecture: HAMP:142:0.00000000000854:211:70:69#HisKA:236:0.0000000000234:300:65:64#HATPase_c:346:8.41e-19:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433755::NZ_QVFH01000042.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6619-8653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW120_20375RefSeq proteinWP_004614922.1
Context group ID
GCF_003433755::NZ_QVFH01000042.1::G00040Context members
DW120_RS20375DW120_RS20380
Partner locus tags
DW120_RS20375DW120_RS20380
Partner old locus tags
DW120_20375DW120_20380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004614922.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35UN82Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35UN82_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW120_RS20375Primary locus identifier stored in the genes table.
Old locus tagDW120_20375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFH01000042.1Sequence record reported by the local genomic context database.
Genomic interval6 619-7 992 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 619-8 653 ntGCF_003433755::NZ_QVFH01000042.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433755::NZ_QVFH01000042.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFH01000042.1All displayed genes belong to this local TCS context.
Neighborhood span6 619-8 653 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 619 nt8 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW120_RS20375GCF_003433755#DW120_RS20375
HKClassicCurrent focus
6 619-7 992 nt · Reverse (-)
DW120_RS20380GCF_003433755#DW120_RS20380
RROmpR
7 982-8 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433755#DW120_RS20375The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877217
Simplified PFAM architecture for HKOC_1877217
PFAM domain coverage: 217 / 457 aa (47.5%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-210] | HisKA[237-300] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1877217
- Positioned domains: HAMP 161-210 ; HisKA 237-300 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_003433755#DW120_RS20375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 995 · GCF_003433755
AssemblyASM343375v1 · Scaffoldhaploid
Genome composition4 368 209 bp · 35,5% GCAbsiella sp. AM10-20
Signal transduction countsGenes 98 · HK 44 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key