1 HisKA#1
186-249 aa · 64 aa · 15.8% of protein
Raw token
HisKA:186:0.00000000000000585:249:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW120_RS16710
Histidine kinase, Classic
Absiella sp. AM10-20 · GCF_003433755
ClassHKTypeClassicLength406 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433755#DW120_RS16710Stable P2CS identifier used across views.
GenomeGCF_003433755Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length406 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 406 aa (42.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa406 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-405 aa · 109 aa · 26.8% of protein
Raw token
HATPase_c:297:1.03e-33:405:109:109- Raw architecture: HisKA:186:0.00000000000000585:249:64:64#HATPase_c:297:1.03e-33:405:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433755::NZ_QVFH01000020.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49760-51647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW120_16715RefSeq proteinWP_117454755.1
Context group ID
GCF_003433755::NZ_QVFH01000020.1::G00021Context members
DW120_RS16705DW120_RS16710
Partner locus tags
DW120_RS16705DW120_RS16710
Partner old locus tags
DW120_16710DW120_16715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454755.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RCB4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RCB4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW120_RS16710Primary locus identifier stored in the genes table.
Old locus tagDW120_16715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFH01000020.1Sequence record reported by the local genomic context database.
Genomic interval50 427-51 647 nt1 221 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 760-51 647 ntGCF_003433755::NZ_QVFH01000020.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433755::NZ_QVFH01000020.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFH01000020.1All displayed genes belong to this local TCS context.
Neighborhood span49 760-51 647 nt1 888 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 760 nt51 647 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW120_RS16705GCF_003433755#DW120_RS16705
RROmpR
49 760-50 440 nt · Forward (+)
DW120_RS16710GCF_003433755#DW120_RS16710
HKClassicCurrent focus
50 427-51 647 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS15940Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2389827
Simplified PFAM architecture for HKOC_2389827
PFAM domain coverage: 172 / 406 aa (42.4%)
1 aa406 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[186-249] | HATPase_c[298-405]
- Domain count: 2
- Matched identifier: HKOC_2389827
- Positioned domains: HisKA 186-249 ; HATPase_c 298-405
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS15940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 995 · GCF_003433755
AssemblyASM343375v1 · Scaffoldhaploid
Genome composition4 368 209 bp · 35,5% GCAbsiella sp. AM10-20
Signal transduction countsGenes 98 · HK 44 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key