1 HisKA#1
485-551 aa · 67 aa · 9.5% of protein
Raw token
HisKA:485:0.000000000000173:551:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW120_RS04425
Histidine kinase, Classic
Absiella sp. AM10-20 · GCF_003433755
ClassHKTypeClassicLength708 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433755#DW120_RS04425Stable P2CS identifier used across views.
GenomeGCF_003433755Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length708 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 708 aa (22.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa708 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
598-689 aa · 92 aa · 13.0% of protein
Raw token
HATPase_c:598:0.0000000000495:689:97:109- Raw architecture: HisKA:485:0.000000000000173:551:67:64#HATPase_c:598:0.0000000000495:689:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433755::NZ_QVFH01000003.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167123-169968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW120_04425RefSeq proteinWP_117452936.1
Context group ID
GCF_003433755::NZ_QVFH01000003.1::G00028Context members
DW120_RS04420DW120_RS04425
Partner locus tags
DW120_RS04420DW120_RS04425
Partner old locus tags
DW120_04420DW120_04425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452936.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4T9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4T9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW120_RS04425Primary locus identifier stored in the genes table.
Old locus tagDW120_04425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFH01000003.1Sequence record reported by the local genomic context database.
Genomic interval167 842-169 968 nt2 127 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span167 123-169 968 ntGCF_003433755::NZ_QVFH01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433755::NZ_QVFH01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span167 123-169 968 nt2 846 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 123 nt169 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW120_RS04420GCF_003433755#DW120_RS04420
RROmpR
167 123-167 836 nt · Forward (+)
DW120_RS04425GCF_003433755#DW120_RS04425
HKClassicCurrent focus
167 842-169 968 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS04505Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0754721
Simplified PFAM architecture for HKOC_0754721
PFAM domain coverage: 158 / 708 aa (22.3%)
1 aa708 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[485-551] | HATPase_c[598-688]
- Domain count: 2
- Matched identifier: HKOC_0754721
- Positioned domains: HisKA 485-551 ; HATPase_c 598-688
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS04505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 995 · GCF_003433755
AssemblyASM343375v1 · Scaffoldhaploid
Genome composition4 368 209 bp · 35,5% GCAbsiella sp. AM10-20
Signal transduction countsGenes 98 · HK 44 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key