1 Response_reg#1
1-100 aa · 100 aa · 21.1% of protein
Raw token
Response_reg:1:1.69e-22:100:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS18625
Response regulator, unclassified
Absiella sp. AM09-45 · GCF_003433745
ClassRRTypeunclassifiedLength475 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433745#DW113_RS18625Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage140 / 475 aa (29.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
427-466 aa · 40 aa · 8.4% of protein
Raw token
HTH_AraC:427:0.00000000288:466:40:42- Raw architecture: Response_reg:1:1.69e-22:100:100:111#HTH_AraC:427:0.00000000288:466:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433745::NZ_QVFJ01000040.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29140-30568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_18625RefSeq proteinWP_147322656.1
Context group ID
GCF_003433745::NZ_QVFJ01000040.1::G00045Context members
DW113_RS18625
Partner locus tags
DW113_RS18625
Partner old locus tags
DW113_18625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147322656.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS18625Primary locus identifier stored in the genes table.
Old locus tagDW113_18625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000040.1Sequence record reported by the local genomic context database.
Genomic interval29 140-30 568 nt1 429 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 140-30 568 ntGCF_003433745::NZ_QVFJ01000040.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000040.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000040.1All displayed genes belong to this local TCS context.
Neighborhood span29 140-30 568 nt1 429 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 140 nt30 568 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW113_RS18625GCF_003433745#DW113_RS18625
RRunclassifiedCurrent focus
29 140-30 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS09555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0167903
Simplified PFAM architecture for RROC_0167903
PFAM domain coverage: 191 / 491 aa (38.9%)
1 aa491 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[407-484]
- Domain count: 2
- Matched identifier: RROC_0167903
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 407-484 ; HTH_18 407-484
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS09555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key