1 Response_reg#1
3-108 aa · 106 aa · 46.1% of protein
Raw token
Response_reg:3:0.00000732:108:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS16225
Response regulator LytTR family
Absiella sp. AM09-45 · GCF_003433745
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003433745#DW113_RS16225Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 230 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
126-218 aa · 93 aa · 40.4% of protein
Raw token
LytTR:126:0.000000000925:218:96:98- Raw architecture: Response_reg:3:0.00000732:108:112:111#LytTR:126:0.000000000925:218:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003433745::NZ_QVFJ01000029.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span20055-20747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_16225RefSeq proteinWP_117455010.1
Context group ID
GCF_003433745::NZ_QVFJ01000029.1::G00033Context members
DW113_RS16225
Partner locus tags
DW113_RS16225
Partner old locus tags
DW113_16225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117455010.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RBW6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RBW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS16225Primary locus identifier stored in the genes table.
Old locus tagDW113_16225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000029.1Sequence record reported by the local genomic context database.
Genomic interval20 055-20 747 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 055-20 747 ntGCF_003433745::NZ_QVFJ01000029.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000029.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000029.1All displayed genes belong to this local TCS context.
Neighborhood span20 055-20 747 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 055 nt20 747 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW113_RS16225GCF_003433745#DW113_RS16225
RRLytTRCurrent focus
20 055-20 747 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS17995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1211231
Simplified PFAM architecture for RROC_1211231
PFAM domain coverage: 190 / 230 aa (82.6%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-107] | LytTR[134-218]
- Domain count: 2
- Matched identifier: RROC_1211231
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; LytTR 134-218 ; LytTR 134-218
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS17995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key