1 HisKA_3#1
165-230 aa · 66 aa · 18.8% of protein
Raw token
HisKA_3:165:8.82e-17:230:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS13660
Histidine kinase, Classic
Absiella sp. AM09-45 · GCF_003433745
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433745#DW113_RS13660Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 352 aa (41.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
269-348 aa · 80 aa · 22.7% of protein
Raw token
HATPase_c:269:0.00000101:348:100:109- Raw architecture: HisKA_3:165:8.82e-17:230:68:68#HATPase_c:269:0.00000101:348:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433745::NZ_QVFJ01000021.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5251-6923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_13660RefSeq proteinWP_117454562.1
Context group ID
GCF_003433745::NZ_QVFJ01000021.1::G00022Context members
DW113_RS13660DW113_RS13665
Partner locus tags
DW113_RS13660DW113_RS13665
Partner old locus tags
DW113_13660DW113_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454562.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RC09Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RC09_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS13660Primary locus identifier stored in the genes table.
Old locus tagDW113_13660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000021.1Sequence record reported by the local genomic context database.
Genomic interval5 251-6 309 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 251-6 923 ntGCF_003433745::NZ_QVFJ01000021.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000021.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000021.1All displayed genes belong to this local TCS context.
Neighborhood span5 251-6 923 nt1 673 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 251 nt6 923 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW113_RS13660GCF_003433745#DW113_RS13660
HKClassicCurrent focus
5 251-6 309 nt · Forward (+)
DW113_RS13665GCF_003433745#DW113_RS13665
RRNarL
6 306-6 923 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS16240Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2789692
Simplified PFAM architecture for HKOC_2789692
PFAM domain coverage: 65 / 352 aa (18.5%)
1 aa352 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[165-229]
- Domain count: 1
- Matched identifier: HKOC_2789692
- Positioned domains: HisKA_3 165-229
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS16240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key