1 Response_reg#1
7-115 aa · 109 aa · 48.0% of protein
Raw token
Response_reg:7:2.49e-26:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS09440
Response regulator OmpR family
Absiella sp. AM09-45 · GCF_003433745
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433745#DW113_RS09440Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:147:4.7e-29:222:77:77- Raw architecture: Response_reg:7:2.49e-26:115:110:111#Trans_reg_C:147:4.7e-29:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433745::NZ_QVFJ01000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104433-106360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_09440RefSeq proteinWP_117453822.1
Context group ID
GCF_003433745::NZ_QVFJ01000011.1::G00006Context members
DW113_RS09440DW113_RS09445
Partner locus tags
DW113_RS09440DW113_RS09445
Partner old locus tags
DW113_09440DW113_09445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453822.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R469Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R469_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS09440Primary locus identifier stored in the genes table.
Old locus tagDW113_09440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval104 433-105 116 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 433-106 360 ntGCF_003433745::NZ_QVFJ01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span104 433-106 360 nt1 928 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 433 nt106 360 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW113_RS09440GCF_003433745#DW113_RS09440
RROmpRCurrent focus
104 433-105 116 nt · Forward (+)
DW113_RS09445GCF_003433745#DW113_RS09445
HKClassic
105 113-106 360 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1366777
Simplified PFAM architecture for RROC_1366777
PFAM domain coverage: 183 / 227 aa (80.6%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1366777
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key