1 HisKA#1
147-210 aa · 64 aa · 17.3% of protein
Raw token
HisKA:147:0.000000000000141:210:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW113_RS03575
Histidine kinase, Classic
Absiella sp. AM09-45 · GCF_003433745
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433745#DW113_RS03575Stable P2CS identifier used across views.
GenomeGCF_003433745Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 370 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
259-370 aa · 112 aa · 30.3% of protein
Raw token
HATPase_c:259:3.81e-27:370:113:109- Raw architecture: HisKA:147:0.000000000000141:210:64:64#HATPase_c:259:3.81e-27:370:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433745::NZ_QVFJ01000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17386-19187Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW113_03575RefSeq proteinWP_117452489.1
Context group ID
GCF_003433745::NZ_QVFJ01000004.1::G00040Context members
DW113_RS03575DW113_RS03580
Partner locus tags
DW113_RS03575DW113_RS03580
Partner old locus tags
DW113_03575DW113_03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117452489.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW113_RS03575Primary locus identifier stored in the genes table.
Old locus tagDW113_03575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval17 386-18 498 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 386-19 187 ntGCF_003433745::NZ_QVFJ01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433745::NZ_QVFJ01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span17 386-19 187 nt1 802 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 386 nt19 187 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW113_RS03575GCF_003433745#DW113_RS03575
HKClassicCurrent focus
17 386-18 498 nt · Reverse (-)
DW113_RS03580GCF_003433745#DW113_RS03580
RROmpR
18 501-19 187 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433745#DW113_RS03575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2684231
Simplified PFAM architecture for HKOC_2684231
PFAM domain coverage: 175 / 370 aa (47.3%)
1 aa370 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-210] | HATPase_c[259-369]
- Domain count: 2
- Matched identifier: HKOC_2684231
- Positioned domains: HisKA 147-210 ; HATPase_c 259-369
Cluster members and taxonomy
Representative gene: GCF_003433745#DW113_RS03575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 993 · GCF_003433745
AssemblyASM343374v1 · Scaffoldhaploid
Genome composition4 247 198 bp · 35,0% GCAbsiella sp. AM09-45
Signal transduction countsGenes 91 · HK 40 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key