1 Response_reg#1
3-102 aa · 100 aa · 48.8% of protein
Raw token
Response_reg:3:1.88e-28:102:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS16245
Response regulator NarL family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeNarLLength205 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS16245Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 205 aa (75.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-199 aa · 54 aa · 26.3% of protein
Raw token
HTH_LUXR:146:4.3e-19:199:54:58- Raw architecture: Response_reg:3:1.88e-28:102:100:111#HTH_LUXR:146:4.3e-19:199:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000016.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5732-7404Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_16240RefSeq proteinWP_117454563.1
Context group ID
GCF_003433695::NZ_QVFG01000016.1::G00021Context members
DW271_RS16240DW271_RS16245
Partner locus tags
DW271_RS16240DW271_RS16245
Partner old locus tags
DW271_16235DW271_16240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454563.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RC52Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RC52_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS16245Primary locus identifier stored in the genes table.
Old locus tagDW271_16240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000016.1Sequence record reported by the local genomic context database.
Genomic interval6 787-7 404 nt618 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 732-7 404 ntGCF_003433695::NZ_QVFG01000016.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000016.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000016.1All displayed genes belong to this local TCS context.
Neighborhood span5 732-7 404 nt1 673 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 732 nt7 404 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS16240GCF_003433695#DW271_RS16240
HKClassic
5 732-6 790 nt · Forward (+)
DW271_RS16245GCF_003433695#DW271_RS16245
RRNarLCurrent focus
6 787-7 404 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS16245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2092354
Simplified PFAM architecture for RROC_2092354
PFAM domain coverage: 156 / 205 aa (76.1%)
1 aa205 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[146-199]
- Domain count: 2
- Matched identifier: RROC_2092354
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 146-199 ; GerE 146-199
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS16245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key