1 HisKA#1
211-267 aa · 57 aa · 13.5% of protein
Raw token
HisKA:211:0.0000000406:267:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS08995
Histidine kinase, Classic
Absiella sp. AM22-9 · GCF_003433695
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS08995Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 421 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-420 aa · 105 aa · 24.9% of protein
Raw token
HATPase_c:316:3.43e-19:420:105:109- Raw architecture: HisKA:211:0.0000000406:267:57:64#HATPase_c:316:3.43e-19:420:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85837-87766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_08990RefSeq proteinWP_117452760.1
Context group ID
GCF_003433695::NZ_QVFG01000005.1::G00049Context members
DW271_RS08995DW271_RS09000
Partner locus tags
DW271_RS08995DW271_RS09000
Partner old locus tags
DW271_08990DW271_08995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452760.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R6U2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R6U2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS08995Primary locus identifier stored in the genes table.
Old locus tagDW271_08990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000005.1Sequence record reported by the local genomic context database.
Genomic interval85 837-87 102 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 837-87 766 ntGCF_003433695::NZ_QVFG01000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span85 837-87 766 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 837 nt87 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS08995GCF_003433695#DW271_RS08995
HKClassicCurrent focus
85 837-87 102 nt · Reverse (-)
DW271_RS09000GCF_003433695#DW271_RS09000
RROmpR
87 089-87 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS08995The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258468
Simplified PFAM architecture for HKOC_2258468
PFAM domain coverage: 163 / 421 aa (38.7%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-267] | HATPase_c[316-418]
- Domain count: 2
- Matched identifier: HKOC_2258468
- Positioned domains: HisKA 208-267 ; HATPase_c 316-418
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS08995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key