1 HAMP#1
149-221 aa · 73 aa · 16.8% of protein
Raw token
HAMP:149:0.000000178:221:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS05900
Histidine kinase, Classic
Absiella sp. AM22-9 · GCF_003433695
ClassHKTypeClassicLength435 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS05900Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length435 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 435 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa435 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-290 aa · 59 aa · 13.6% of protein
Raw token
HisKA:232:0.00000000131:290:59:643 HATPase_c#3
344-435 aa · 92 aa · 21.1% of protein
Raw token
HATPase_c:344:0.00000217:435:109:109- Raw architecture: HAMP:149:0.000000178:221:73:69#HisKA:232:0.00000000131:290:59:64#HATPase_c:344:0.00000217:435:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000003.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110821-112810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_05900RefSeq proteinWP_117454679.1
Context group ID
GCF_003433695::NZ_QVFG01000003.1::G00044Context members
DW271_RS05895DW271_RS05900
Partner locus tags
DW271_RS05895DW271_RS05900
Partner old locus tags
DW271_05895DW271_05900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454679.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R457Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R457_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS05900Primary locus identifier stored in the genes table.
Old locus tagDW271_05900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000003.1Sequence record reported by the local genomic context database.
Genomic interval111 503-112 810 nt1 308 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 821-112 810 ntGCF_003433695::NZ_QVFG01000003.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000003.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span110 821-112 810 nt1 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 821 nt112 810 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS05895GCF_003433695#DW271_RS05895
RROmpR
110 821-111 510 nt · Forward (+)
DW271_RS05900GCF_003433695#DW271_RS05900
HKClassicCurrent focus
111 503-112 810 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS05900The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2123928
Simplified PFAM architecture for HKOC_2123928
PFAM domain coverage: 102 / 435 aa (23.4%)
1 aa435 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[177-220] | HisKA[233-290]
- Domain count: 2
- Matched identifier: HKOC_2123928
- Positioned domains: HAMP 177-220 ; HisKA 233-290
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS05900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key