1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:5.79e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW271_RS00140
Response regulator OmpR family
Absiella sp. AM22-9 · GCF_003433695
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003433695#DW271_RS00140Stable P2CS identifier used across views.
GenomeGCF_003433695Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 233 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.5% of protein
Raw token
Trans_reg_C:160:3.25e-30:230:72:77- Raw architecture: Response_reg:5:5.79e-31:114:111:111#Trans_reg_C:160:3.25e-30:230:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003433695::NZ_QVFG01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24871-27747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW271_00140RefSeq proteinWP_117536151.1
Context group ID
GCF_003433695::NZ_QVFG01000001.1::G00001Context members
DW271_RS22230DW271_RS00140
Partner locus tags
DW271_RS22230DW271_RS00140
Partner old locus tags
DW271_00135DW271_00140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117536151.1Primary protein accession used for annex mappings.
UniProt accessionA0A7G9GQ18Primary UniProt accession resolved in the annex database.
UniProt IDA0A7G9GQ18_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW271_RS00140Primary locus identifier stored in the genes table.
Old locus tagDW271_00140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVFG01000001.1Sequence record reported by the local genomic context database.
Genomic interval27 046-27 747 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 871-27 747 ntGCF_003433695::NZ_QVFG01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003433695::NZ_QVFG01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVFG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span24 871-27 747 nt2 877 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 871 nt27 747 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW271_RS22230GCF_003433695#DW271_RS22230
HKClassic
24 871-27 033 nt · Reverse (-)
DW271_RS00140GCF_003433695#DW271_RS00140
RROmpRCurrent focus
27 046-27 747 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS00140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090386
Simplified PFAM architecture for RROC_1090386
PFAM domain coverage: 181 / 233 aa (77.7%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[159-229]
- Domain count: 2
- Matched identifier: RROC_1090386
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 159-229 ; Trans_reg_C 159-229
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS00140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 291 996 · GCF_003433695
AssemblyASM343369v1 · Scaffoldhaploid
Genome composition4 345 180 bp · 35,0% GCAbsiella sp. AM22-9
Signal transduction countsGenes 99 · HK 44 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key