1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.000000000000374:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DET55_RS13525
Histidine kinase, Classic
Bacillus mycoides · GCF_003386775
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003386775#DET55_RS13525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.000000000000751:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:1.85e-21:350:110:109- Raw architecture: HAMP:50:0.000000000000374:119:70:69#HisKA:130:0.000000000000751:191:62:64#HATPase_c:242:1.85e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003386775::NZ_QTTY01000011.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38440-40195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDET55_11137RefSeq proteinWP_113938123.1
Context group ID
GCF_003386775::NZ_QTTY01000011.1::G00031Context members
DET55_RS13525DET55_RS13530
Partner locus tags
DET55_RS13525DET55_RS13530
Partner old locus tags
DET55_11137DET55_11138
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_113938123.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9UX76Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9UX76_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDET55_RS13525Primary locus identifier stored in the genes table.
Old locus tagDET55_11137Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTTY01000011.1Sequence record reported by the local genomic context database.
Genomic interval38 440-39 507 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 440-40 195 ntGCF_003386775::NZ_QTTY01000011.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003386775::NZ_QTTY01000011.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTTY01000011.1All displayed genes belong to this local TCS context.
Neighborhood span38 440-40 195 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 440 nt40 195 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DET55_RS13525GCF_003386775#DET55_RS13525
HKClassicCurrent focus
38 440-39 507 nt · Reverse (-)
DET55_RS13530GCF_003386775#DET55_RS13530
RROmpR
39 497-40 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003315125#DET63_RS24415Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2776093
Simplified PFAM architecture for HKOC_2776093
PFAM domain coverage: 221 / 355 aa (62.3%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[247-351]
- Domain count: 3
- Matched identifier: HKOC_2776093
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 247-351
Cluster members and taxonomy
Representative gene: GCF_003315125#DET63_RS24415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_003386775
AssemblyASM338677v1 · Scaffoldhaploid
Genome composition5 794 236 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key