1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:8.65e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DET55_RS08605
Response regulator OmpR family
Bacillus mycoides · GCF_003386775
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003386775#DET55_RS08605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:4.88e-30:219:75:77- Raw architecture: Response_reg:6:8.65e-35:115:111:111#Trans_reg_C:150:4.88e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003386775::NZ_QTTY01000006.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94698-96828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDET55_10690RefSeq proteinWP_002136526.1
Context group ID
GCF_003386775::NZ_QTTY01000006.1::G00020Context members
DET55_RS08600DET55_RS08605
Partner locus tags
DET55_RS08600DET55_RS08605
Partner old locus tags
DET55_10689DET55_10690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002136526.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9VJ31Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9VJ31_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDET55_RS08605Primary locus identifier stored in the genes table.
Old locus tagDET55_10690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTTY01000006.1Sequence record reported by the local genomic context database.
Genomic interval96 163-96 828 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 698-96 828 ntGCF_003386775::NZ_QTTY01000006.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003386775::NZ_QTTY01000006.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTTY01000006.1All displayed genes belong to this local TCS context.
Neighborhood span94 698-96 828 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 698 nt96 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DET55_RS08600GCF_003386775#DET55_RS08600
HKClassic
94 698-96 170 nt · Reverse (-)
DET55_RS08605GCF_003386775#DET55_RS08605
RROmpRCurrent focus
96 163-96 828 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS10470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1678688
Simplified PFAM architecture for RROC_1678688
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1678688
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS10470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_003386775
AssemblyASM338677v1 · Scaffoldhaploid
Genome composition5 794 236 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key