1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:6.24e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DET55_RS06905
Response regulator OmpR family
Bacillus mycoides · GCF_003386775
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003386775#DET55_RS06905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:147:4.79e-25:221:75:77- Raw architecture: Response_reg:4:6.24e-28:113:111:111#Trans_reg_C:147:4.79e-25:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003386775::NZ_QTTY01000004.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span265019-266948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDET55_104264RefSeq proteinWP_002137384.1
Context group ID
GCF_003386775::NZ_QTTY01000004.1::G00018Context members
DET55_RS06905DET55_RS06910
Partner locus tags
DET55_RS06905DET55_RS06910
Partner old locus tags
DET55_104264DET55_104265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002137384.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9VP39Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9VP39_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDET55_RS06905Primary locus identifier stored in the genes table.
Old locus tagDET55_104264Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTTY01000004.1Sequence record reported by the local genomic context database.
Genomic interval265 019-265 711 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span265 019-266 948 ntGCF_003386775::NZ_QTTY01000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003386775::NZ_QTTY01000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTTY01000004.1All displayed genes belong to this local TCS context.
Neighborhood span265 019-266 948 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
265 019 nt266 948 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DET55_RS06905GCF_003386775#DET55_RS06905
RROmpRCurrent focus
265 019-265 711 nt · Forward (+)
DET55_RS06910GCF_003386775#DET55_RS06910
HKClassic
265 716-266 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293705#IG3_RS13985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201210
Simplified PFAM architecture for RROC_1201210
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1201210
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_000293705#IG3_RS13985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_003386775
AssemblyASM338677v1 · Scaffoldhaploid
Genome composition5 794 236 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key