1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.77e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE161_RS07860
Response regulator OmpR family
Bifidobacterium longum · GCF_003370255
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370255#CE161_RS07860Stable P2CS identifier used across views.
GenomeGCF_003370255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.55e-33:229:77:77- Raw architecture: Response_reg:4:2.77e-38:113:111:111#Trans_reg_C:153:1.55e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370255::NZ_NJNZ01000047.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span399-1103Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE161_07755RefSeq proteinWP_179133499.1
Context group ID
GCF_003370255::NZ_NJNZ01000047.1::G00007Context members
CE161_RS07860
Partner locus tags
CE161_RS07860
Partner old locus tags
CE161_07755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_179133499.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35S8M8Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35S8M8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE161_RS07860Primary locus identifier stored in the genes table.
Old locus tagCE161_07755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNZ01000047.1Sequence record reported by the local genomic context database.
Genomic interval399-1 103 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span399-1 103 ntGCF_003370255::NZ_NJNZ01000047.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370255::NZ_NJNZ01000047.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNZ01000047.1All displayed genes belong to this local TCS context.
Neighborhood span399-1 103 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
399 nt1 103 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE161_RS07860GCF_003370255#CE161_RS07860
RROmpRCurrent focus
399-1 103 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS05735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053022
Simplified PFAM architecture for RROC_1053022
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1053022
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370255
AssemblyASM337025v1 · Scaffoldhaploid
Genome composition2 275 165 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key