1 HisKA#1
180-245 aa · 66 aa · 16.9% of protein
Raw token
HisKA:180:0.000000000276:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE161_RS00815
Histidine kinase, Classic
Bifidobacterium longum · GCF_003370255
ClassHKTypeClassicLength390 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370255#CE161_RS00815Stable P2CS identifier used across views.
GenomeGCF_003370255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length390 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 390 aa (35.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa390 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-388 aa · 73 aa · 18.7% of protein
Raw token
HATPase_c:316:0.00000000000000533:388:73:109- Raw architecture: HisKA:180:0.000000000276:245:66:64#HATPase_c:316:0.00000000000000533:388:73:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370255::NZ_NJNZ01000004.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE161_00825RefSeq proteinWP_115769942.1
Context group ID
GCF_003370255::NZ_NJNZ01000004.1::G00004Context members
CE161_RS00815
Partner locus tags
CE161_RS00815
Partner old locus tags
CE161_00825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_115769942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE161_RS00815Primary locus identifier stored in the genes table.
Old locus tagCE161_00825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval1-1 169 nt1 169 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 169 ntGCF_003370255::NZ_NJNZ01000004.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370255::NZ_NJNZ01000004.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 169 nt1 169 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 169 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE161_RS00815GCF_003370255#CE161_RS00815
HKClassicCurrent focus
1-1 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS05740Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2043209
Simplified PFAM architecture for HKOC_2043209
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2043209
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS05740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370255
AssemblyASM337025v1 · Scaffoldhaploid
Genome composition2 275 165 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key