1 Response_reg#1
4-109 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:4:3.43e-18:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE161_RS00525
Response regulator LytTR family
Bifidobacterium longum · GCF_003370255
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370255#CE161_RS00525Stable P2CS identifier used across views.
GenomeGCF_003370255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 238 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-224 aa · 86 aa · 36.1% of protein
Raw token
LytTR:139:2.25e-20:224:91:98- Raw architecture: Response_reg:4:3.43e-18:109:109:111#LytTR:139:2.25e-20:224:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370255::NZ_NJNZ01000002.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60147-60863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE161_00535RefSeq proteinWP_115769913.1
Context group ID
GCF_003370255::NZ_NJNZ01000002.1::G00013Context members
CE161_RS00525
Partner locus tags
CE161_RS00525
Partner old locus tags
CE161_00535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_115769913.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE161_RS00525Primary locus identifier stored in the genes table.
Old locus tagCE161_00535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval60 147-60 863 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 147-60 863 ntGCF_003370255::NZ_NJNZ01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370255::NZ_NJNZ01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span60 147-60 863 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 147 nt60 863 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE161_RS00525GCF_003370255#CE161_RS00525
RRLytTRCurrent focus
60 147-60 863 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370255#CE161_RS00525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940242
Simplified PFAM architecture for RROC_0940242
PFAM domain coverage: 195 / 238 aa (81.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[139-224]
- Domain count: 2
- Matched identifier: RROC_0940242
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 139-224 ; LytTR 139-224
Cluster members and taxonomy
Representative gene: GCF_003370255#CE161_RS00525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370255
AssemblyASM337025v1 · Scaffoldhaploid
Genome composition2 275 165 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key