1 HisKA_3#1
242-304 aa · 63 aa · 12.2% of protein
Raw token
HisKA_3:242:2.02e-19:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE171_RS06755
Histidine kinase, Classic
Bifidobacterium longum · GCF_003370225
ClassHKTypeClassicLength518 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370225#CE171_RS06755Stable P2CS identifier used across views.
GenomeGCF_003370225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 518 aa (29.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 16.8% of protein
Raw token
HATPase_c:353:0.00000000000117:439:102:109- Raw architecture: HisKA_3:242:2.02e-19:304:63:68#HATPase_c:353:0.00000000000117:439:102:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370225::NZ_NJNT01000006.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44857-46412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE171_06570RefSeq proteinWP_236837457.1
Context group ID
GCF_003370225::NZ_NJNT01000006.1::G00013Context members
CE171_RS06755
Partner locus tags
CE171_RS06755
Partner old locus tags
CE171_06570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236837457.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE171_RS06755Primary locus identifier stored in the genes table.
Old locus tagCE171_06570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNT01000006.1Sequence record reported by the local genomic context database.
Genomic interval44 857-46 412 nt1 556 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 857-46 412 ntGCF_003370225::NZ_NJNT01000006.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370225::NZ_NJNT01000006.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNT01000006.1All displayed genes belong to this local TCS context.
Neighborhood span44 857-46 412 nt1 556 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 857 nt46 412 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE171_RS06755GCF_003370225#CE171_RS06755
HKClassicCurrent focus
44 857-46 412 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003369995#CE165_RS06320Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459743
Simplified PFAM architecture for HKOC_0459743
PFAM domain coverage: 428 / 869 aa (49.3%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-692]
- Domain count: 4
- Matched identifier: HKOC_0459743
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-692
Cluster members and taxonomy
Representative gene: GCF_003369995#CE165_RS06320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370225
AssemblyASM337022v1 · Scaffoldhaploid
Genome composition2 342 776 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key