1 Response_reg#1
41-127 aa · 87 aa · 38.2% of protein
Raw token
Response_reg:41:0.0000000000000997:127:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE167_RS00335
Response regulator NarL family
Bifidobacterium breve · GCF_003370195
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370195#CE167_RS00335Stable P2CS identifier used across views.
GenomeGCF_003370195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 228 aa (63.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-221 aa · 57 aa · 25.0% of protein
Raw token
HTH_LUXR:165:0.00000000000000637:221:57:58- Raw architecture: Response_reg:41:0.0000000000000997:127:87:111#HTH_LUXR:165:0.00000000000000637:221:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370195::NZ_NJOG01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54634-55320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE167_00340RefSeq proteinWP_232782656.1
Context group ID
GCF_003370195::NZ_NJOG01000001.1::G00003Context members
CE167_RS00335
Partner locus tags
CE167_RS00335
Partner old locus tags
CE167_00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232782656.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE167_RS00335Primary locus identifier stored in the genes table.
Old locus tagCE167_00340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJOG01000001.1Sequence record reported by the local genomic context database.
Genomic interval54 634-55 320 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 634-55 320 ntGCF_003370195::NZ_NJOG01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370195::NZ_NJOG01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJOG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span54 634-55 320 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 634 nt55 320 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE167_RS00335GCF_003370195#CE167_RS00335
RRNarLCurrent focus
54 634-55 320 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263855#BBM1114_RS08785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162454
Simplified PFAM architecture for RROC_1162454
PFAM domain coverage: 166 / 231 aa (71.9%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-129] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1162454
- Positioned domains: Response_reg 17-129 ; Response_reg 17-129 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_001263855#BBM1114_RS08785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003370195
AssemblyASM337019v1 · Scaffoldhaploid
Genome composition2 539 531 bp · 59,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key