1 HisKA_2#1
16-85 aa · 70 aa · 32.0% of protein
Raw token
HisKA_2:16:1.84e-31:85:71:76P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE162_RS03625
Histidine kinase, Classic
Bifidobacterium breve · GCF_003370175
ClassHKTypeClassicLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370175#CE162_RS03625Stable P2CS identifier used across views.
GenomeGCF_003370175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_2HATPase_c
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 219 aa (79.0%)Merged over positioned domains only.
Domain description1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
112-214 aa · 103 aa · 47.0% of protein
Raw token
HATPase_c:112:0.00000000000000125:214:112:109- Raw architecture: HisKA_2:16:1.84e-31:85:71:76#HATPase_c:112:0.00000000000000125:214:112:109
- Domain description: 1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370175::NZ_NJOE01000015.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE162_03610RefSeq proteinWP_147294649.1
Context group ID
GCF_003370175::NZ_NJOE01000015.1::G00006Context members
CE162_RS03625
Partner locus tags
CE162_RS03625
Partner old locus tags
CE162_03610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147294649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE162_RS03625Primary locus identifier stored in the genes table.
Old locus tagCE162_03610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJOE01000015.1Sequence record reported by the local genomic context database.
Genomic interval1-661 nt661 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-661 ntGCF_003370175::NZ_NJOE01000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370175::NZ_NJOE01000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJOE01000015.1All displayed genes belong to this local TCS context.
Neighborhood span1-661 nt661 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt661 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE162_RS03625GCF_003370175#CE162_RS03625
HKClassicCurrent focus
1-661 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS05440Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504342
Simplified PFAM architecture for HKOC_1504342
PFAM domain coverage: 416 / 495 aa (84.0%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[174-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504342
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 174-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS05440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003370175
AssemblyASM337017v1 · Scaffoldhaploid
Genome composition2 236 836 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 18 · HK 8 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key