1 Response_reg#1
27-123 aa · 97 aa · 78.9% of protein
Raw token
Response_reg:27:7.06e-26:123:97:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE159_RS11305
Response regulator, CheY family
Bifidobacterium longum · GCF_003370095
ClassRRTypeCheYLength123 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370095#CE159_RS11305Stable P2CS identifier used across views.
GenomeGCF_003370095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length123 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage97 / 123 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa123 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:27:7.06e-26:123:97:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370095::NZ_NJNY01000028.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8389-10026Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003370095::NZ_NJNY01000028.1::G00010Context members
CE159_RS03925CE159_RS11305
Partner locus tags
CE159_RS03925CE159_RS11305
Partner old locus tags
CE159_03900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236839641.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE159_RS11305Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NJNY01000028.1Sequence record reported by the local genomic context database.
Genomic interval9 656-10 026 nt371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 389-10 026 ntGCF_003370095::NZ_NJNY01000028.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370095::NZ_NJNY01000028.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNY01000028.1All displayed genes belong to this local TCS context.
Neighborhood span8 389-10 026 nt1 638 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 389 nt10 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE159_RS03925GCF_003370095#CE159_RS03925
HKClassic
8 389-9 621 nt · Forward (+)
CE159_RS11305GCF_003370095#CE159_RS11305
RRCheYCurrent focus
9 656-10 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS02670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862556
Simplified PFAM architecture for RROC_0862556
PFAM domain coverage: 165 / 241 aa (68.5%)
1 aa241 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[25-138] | Sigma70_r4_2[170-220]
- Domain count: 2
- Matched identifier: RROC_0862556
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; Sigma70_r4_2 170-220 ; Sigma70_r4_2 170-220
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS02670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370095
AssemblyASM337009v1 · Scaffoldhaploid
Genome composition2 298 368 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key