1 Response_reg#1
7-119 aa · 113 aa · 51.6% of protein
Raw token
Response_reg:7:2.18e-26:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE159_RS08765
Response regulator NarL family
Bifidobacterium longum · GCF_003370095
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370095#CE159_RS08765Stable P2CS identifier used across views.
GenomeGCF_003370095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 219 aa (72.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
170-214 aa · 45 aa · 20.5% of protein
Raw token
HTH_LUXR:170:0.000000000368:214:45:58- Raw architecture: Response_reg:7:2.18e-26:119:113:111#HTH_LUXR:170:0.000000000368:214:45:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370095::NZ_NJNY01000111.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1258-1917Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE159_08670RefSeq proteinWP_085381966.1
Context group ID
GCF_003370095::NZ_NJNY01000111.1::G00002Context members
CE159_RS08765
Partner locus tags
CE159_RS08765
Partner old locus tags
CE159_08670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085381966.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X3A0N0Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X3A0N0_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE159_RS08765Primary locus identifier stored in the genes table.
Old locus tagCE159_08670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNY01000111.1Sequence record reported by the local genomic context database.
Genomic interval1 258-1 917 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 258-1 917 ntGCF_003370095::NZ_NJNY01000111.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370095::NZ_NJNY01000111.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNY01000111.1All displayed genes belong to this local TCS context.
Neighborhood span1 258-1 917 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 258 nt1 917 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE159_RS08765GCF_003370095#CE159_RS08765
RRNarLCurrent focus
1 258-1 917 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002107955#B0070_RS06030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1774519
Simplified PFAM architecture for RROC_1774519
PFAM domain coverage: 157 / 219 aa (71.7%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[169-213]
- Domain count: 2
- Matched identifier: RROC_1774519
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GerE 169-213 ; GerE 169-213
Cluster members and taxonomy
Representative gene: GCF_002107955#B0070_RS06030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370095
AssemblyASM337009v1 · Scaffoldhaploid
Genome composition2 298 368 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key