1 Response_reg#1
3-106 aa · 104 aa · 87.4% of protein
Raw token
Response_reg:3:1.3e-22:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE159_RS06615
Response regulator, CheY family
Bifidobacterium longum · GCF_003370095
ClassRRTypeCheYLength119 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370095#CE159_RS06615Stable P2CS identifier used across views.
GenomeGCF_003370095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length119 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 119 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa119 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.3e-22:106:104:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370095::NZ_NJNY01000065.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1001-2709Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE159_06560RefSeq proteinWP_147294956.1
Context group ID
GCF_003370095::NZ_NJNY01000065.1::G00009Context members
CE159_RS06610CE159_RS06615
Partner locus tags
CE159_RS06610CE159_RS06615
Partner old locus tags
CE159_06555CE159_06560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147294956.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE159_RS06615Primary locus identifier stored in the genes table.
Old locus tagCE159_06560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNY01000065.1Sequence record reported by the local genomic context database.
Genomic interval2 353-2 709 nt357 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 001-2 709 ntGCF_003370095::NZ_NJNY01000065.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370095::NZ_NJNY01000065.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNY01000065.1All displayed genes belong to this local TCS context.
Neighborhood span1 001-2 709 nt1 709 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 001 nt2 709 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE159_RS06610GCF_003370095#CE159_RS06610
HKClassic
1 001-2 353 nt · Forward (+)
CE159_RS06615GCF_003370095#CE159_RS06615
RRCheYCurrent focus
2 353-2 709 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370095#CE159_RS06615The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2450511
Simplified PFAM architecture for RROC_2450511
PFAM domain coverage: 105 / 119 aa (88.2%)
1 aa119 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-107]
- Domain count: 1
- Matched identifier: RROC_2450511
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107
Cluster members and taxonomy
Representative gene: GCF_003370095#CE159_RS06615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370095
AssemblyASM337009v1 · Scaffoldhaploid
Genome composition2 298 368 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key