1 Response_reg#1
1-93 aa · 93 aa · 44.7% of protein
Raw token
Response_reg:1:3.23e-23:93:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE159_RS06230
Response regulator NarL family
Bifidobacterium longum · GCF_003370095
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370095#CE159_RS06230Stable P2CS identifier used across views.
GenomeGCF_003370095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 208 aa (72.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
145-202 aa · 58 aa · 27.9% of protein
Raw token
HTH_LUXR:145:1.18e-23:202:58:58- Raw architecture: Response_reg:1:3.23e-23:93:93:111#HTH_LUXR:145:1.18e-23:202:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370095::NZ_NJNY01000059.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-629Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE159_06175RefSeq proteinWP_147294948.1
Context group ID
GCF_003370095::NZ_NJNY01000059.1::G00008Context members
CE159_RS06230
Partner locus tags
CE159_RS06230
Partner old locus tags
CE159_06175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147294948.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE159_RS06230Primary locus identifier stored in the genes table.
Old locus tagCE159_06175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNY01000059.1Sequence record reported by the local genomic context database.
Genomic interval1-629 nt629 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-629 ntGCF_003370095::NZ_NJNY01000059.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370095::NZ_NJNY01000059.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNY01000059.1All displayed genes belong to this local TCS context.
Neighborhood span1-629 nt629 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt629 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE159_RS06230GCF_003370095#CE159_RS06230
RRNarLCurrent focus
1-629 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS03185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743183
Simplified PFAM architecture for RROC_0743183
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0743183
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS03185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370095
AssemblyASM337009v1 · Scaffoldhaploid
Genome composition2 298 368 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key