1 HisKA#1
141-206 aa · 66 aa · 16.3% of protein
Raw token
HisKA:141:0.000000000231:206:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE157_RS03475
Histidine kinase, Classic
Bifidobacterium longum · GCF_003370065
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370065#CE157_RS03475Stable P2CS identifier used across views.
GenomeGCF_003370065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 404 aa (44.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
277-389 aa · 113 aa · 28.0% of protein
Raw token
HATPase_c:277:3.34e-29:389:113:109- Raw architecture: HisKA:141:0.000000000231:206:66:64#HATPase_c:277:3.34e-29:389:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370065::NZ_NJNX01000005.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89281-91398Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE157_03475RefSeq proteinWP_236838990.1
Context group ID
GCF_003370065::NZ_NJNX01000005.1::G00005Context members
CE157_RS03470CE157_RS03475
Partner locus tags
CE157_RS03470CE157_RS03475
Partner old locus tags
CE157_03470CE157_03475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236838990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE157_RS03475Primary locus identifier stored in the genes table.
Old locus tagCE157_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNX01000005.1Sequence record reported by the local genomic context database.
Genomic interval90 184-91 398 nt1 215 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 281-91 398 ntGCF_003370065::NZ_NJNX01000005.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370065::NZ_NJNX01000005.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNX01000005.1All displayed genes belong to this local TCS context.
Neighborhood span89 281-91 398 nt2 118 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 281 nt91 398 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE157_RS03470GCF_003370065#CE157_RS03470
RROmpR
89 281-89 985 nt · Reverse (-)
CE157_RS03475GCF_003370065#CE157_RS03475
HKClassicCurrent focus
90 184-91 398 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS05325Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2041491
Simplified PFAM architecture for HKOC_2041491
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2041491
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS05325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370065
AssemblyASM337006v1 · Scaffoldhaploid
Genome composition2 344 663 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key