1 Response_reg#1
9-79 aa · 71 aa · 75.5% of protein
Raw token
Response_reg:9:1.12e-18:79:71:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE170_RS11655
Response regulator, CheY family
Bifidobacterium longum · GCF_003370025
ClassRRTypeCheYLength94 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370025#CE170_RS11655Stable P2CS identifier used across views.
GenomeGCF_003370025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length94 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage71 / 94 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa94 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:1.12e-18:79:71:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370025::NZ_NJNV01000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21901-24868Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003370025::NZ_NJNV01000005.1::G00009Context members
CE170_RS11655CE170_RS00650
Partner locus tags
CE170_RS11655CE170_RS00650
Partner old locus tags
CE170_00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_258865676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE170_RS11655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NJNV01000005.1Sequence record reported by the local genomic context database.
Genomic interval21 901-22 182 nt282 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 901-24 868 ntGCF_003370025::NZ_NJNV01000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370025::NZ_NJNV01000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span21 901-24 868 nt2 968 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 901 nt24 868 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE170_RS11655GCF_003370025#CE170_RS11655
RRCheYCurrent focus
21 901-22 182 nt · Reverse (-)
CE170_RS00650GCF_003370025#CE170_RS00650
HKClassic
22 259-24 868 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166315#BBMN68_RS03360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743349
Simplified PFAM architecture for RROC_0743349
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0743349
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000166315#BBMN68_RS03360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370025
AssemblyASM337002v1 · Scaffoldhaploid
Genome composition2 278 383 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key