1 Response_reg#1
14-126 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:14:0.00000000000000161:126:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE170_RS09960
Response regulator NarL family
Bifidobacterium longum · GCF_003370025
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003370025#CE170_RS09960Stable P2CS identifier used across views.
GenomeGCF_003370025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 226 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-219 aa · 56 aa · 24.8% of protein
Raw token
HTH_LUXR:164:0.00000000000617:219:56:58- Raw architecture: Response_reg:14:0.00000000000000161:126:114:111#HTH_LUXR:164:0.00000000000617:219:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003370025::NZ_NJNV01000251.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1179-1859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE170_09805RefSeq proteinWP_258865882.1
Context group ID
GCF_003370025::NZ_NJNV01000251.1::G00001Context members
CE170_RS09960
Partner locus tags
CE170_RS09960
Partner old locus tags
CE170_09805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_258865882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE170_RS09960Primary locus identifier stored in the genes table.
Old locus tagCE170_09805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNV01000251.1Sequence record reported by the local genomic context database.
Genomic interval1 179-1 859 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 179-1 859 ntGCF_003370025::NZ_NJNV01000251.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370025::NZ_NJNV01000251.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNV01000251.1All displayed genes belong to this local TCS context.
Neighborhood span1 179-1 859 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 179 nt1 859 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CE170_RS09960GCF_003370025#CE170_RS09960
RRNarLCurrent focus
1 179-1 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033659285#RS913_RS01555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0600460
Simplified PFAM architecture for RROC_0600460
PFAM domain coverage: 168 / 278 aa (60.4%)
1 aa278 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[65-177] | GerE[217-271]
- Domain count: 2
- Matched identifier: RROC_0600460
- Positioned domains: Response_reg 65-177 ; GerE 217-271
Cluster members and taxonomy
Representative gene: GCF_033659285#RS913_RS01555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370025
AssemblyASM337002v1 · Scaffoldhaploid
Genome composition2 278 383 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key