1 Response_reg#1
2-109 aa · 108 aa · 45.6% of protein
Raw token
Response_reg:2:2.25e-33:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE170_RS06235
Response regulator OmpR family
Bifidobacterium longum · GCF_003370025
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370025#CE170_RS06235Stable P2CS identifier used across views.
GenomeGCF_003370025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:156:7.42e-33:232:77:77- Raw architecture: Response_reg:2:2.25e-33:109:109:111#Trans_reg_C:156:7.42e-33:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370025::NZ_NJNV01000108.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2411Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE170_06150RefSeq proteinWP_309543961.1
Context group ID
GCF_003370025::NZ_NJNV01000108.1::G00007Context members
CE170_RS06235CE170_RS06240
Partner locus tags
CE170_RS06235CE170_RS06240
Partner old locus tags
CE170_06150CE170_06155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309543961.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE170_RS06235Primary locus identifier stored in the genes table.
Old locus tagCE170_06150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNV01000108.1Sequence record reported by the local genomic context database.
Genomic interval1-717 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 411 ntGCF_003370025::NZ_NJNV01000108.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370025::NZ_NJNV01000108.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNV01000108.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 411 nt2 411 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 411 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE170_RS06235GCF_003370025#CE170_RS06235
RROmpRCurrent focus
1-717 nt · Forward (+)
CE170_RS06240GCF_003370025#CE170_RS06240
HKClassic
714-2 411 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370025#CE170_RS06235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968323
Simplified PFAM architecture for RROC_0968323
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-109] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0968323
- Positioned domains: Response_reg 2-109 ; Response_reg 2-109 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_003370025#CE170_RS06235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370025
AssemblyASM337002v1 · Scaffoldhaploid
Genome composition2 278 383 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key