1 Response_reg#1
3-106 aa · 104 aa · 80.6% of protein
Raw token
Response_reg:3:3.16e-22:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE170_RS02245
Response regulator, CheY family
Bifidobacterium longum · GCF_003370025
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370025#CE170_RS02245Stable P2CS identifier used across views.
GenomeGCF_003370025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 129 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:3.16e-22:106:104:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370025::NZ_NJNV01000025.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13388-15127Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE170_02215RefSeq proteinWP_151258864.1
Context group ID
GCF_003370025::NZ_NJNV01000025.1::G00005Context members
CE170_RS02240CE170_RS02245
Partner locus tags
CE170_RS02240CE170_RS02245
Partner old locus tags
CE170_02210CE170_02215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_151258864.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE170_RS02245Primary locus identifier stored in the genes table.
Old locus tagCE170_02215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNV01000025.1Sequence record reported by the local genomic context database.
Genomic interval14 740-15 127 nt388 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 388-15 127 ntGCF_003370025::NZ_NJNV01000025.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370025::NZ_NJNV01000025.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNV01000025.1All displayed genes belong to this local TCS context.
Neighborhood span13 388-15 127 nt1 740 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 388 nt15 127 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE170_RS02240GCF_003370025#CE170_RS02240
HKClassic
13 388-14 740 nt · Forward (+)
CE170_RS02245GCF_003370025#CE170_RS02245
RRCheYCurrent focus
14 740-15 127 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS09160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847431
Simplified PFAM architecture for RROC_1847431
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1847431
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS09160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370025
AssemblyASM337002v1 · Scaffoldhaploid
Genome composition2 278 383 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key