1 Response_reg#1
3-106 aa · 104 aa · 88.1% of protein
Raw token
Response_reg:3:1.71e-22:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CE169_RS07530
Response regulator, CheY family
Bifidobacterium longum · GCF_003370005
ClassRRTypeCheYLength118 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003370005#CE169_RS07530Stable P2CS identifier used across views.
GenomeGCF_003370005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length118 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 118 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa118 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.71e-22:106:104:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003370005::NZ_NJNR01000039.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3239-4945Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCE169_07450RefSeq proteinWP_147295718.1
Context group ID
GCF_003370005::NZ_NJNR01000039.1::G00009Context members
CE169_RS07525CE169_RS07530
Partner locus tags
CE169_RS07525CE169_RS07530
Partner old locus tags
CE169_07445CE169_07450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_147295718.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D8TYA6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D8TYA6_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCE169_RS07530Primary locus identifier stored in the genes table.
Old locus tagCE169_07450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NJNR01000039.1Sequence record reported by the local genomic context database.
Genomic interval4 591-4 945 nt355 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 239-4 945 ntGCF_003370005::NZ_NJNR01000039.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003370005::NZ_NJNR01000039.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NJNR01000039.1All displayed genes belong to this local TCS context.
Neighborhood span3 239-4 945 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 239 nt4 945 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CE169_RS07525GCF_003370005#CE169_RS07525
HKClassic
3 239-4 591 nt · Forward (+)
CE169_RS07530GCF_003370005#CE169_RS07530
RRCheYCurrent focus
4 591-4 945 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS09160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847431
Simplified PFAM architecture for RROC_1847431
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1847431
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS09160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003370005
AssemblyASM337000v1 · Scaffoldhaploid
Genome composition2 723 321 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key