1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:4.17e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DVB78_RS03525
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_003342655
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003342655#DVB78_RS03525Stable P2CS identifier used across views.
GenomeGCF_003342655Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.59e-30:235:77:77- Raw architecture: Response_reg:15:4.17e-36:122:109:111#Trans_reg_C:164:1.59e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003342655::NZ_CP031133.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span822010-823805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDVB78_03525RefSeq proteinWP_114555013.1
Context group ID
GCF_003342655::NZ_CP031133.1::G00003Context members
DVB78_RS03520DVB78_RS03525
Partner locus tags
DVB78_RS03520DVB78_RS03525
Partner old locus tags
DVB78_03520DVB78_03525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_114555013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDVB78_RS03525Primary locus identifier stored in the genes table.
Old locus tagDVB78_03525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP031133.1Sequence record reported by the local genomic context database.
Genomic interval823 083-823 805 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span822 010-823 805 ntGCF_003342655::NZ_CP031133.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003342655::NZ_CP031133.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP031133.1All displayed genes belong to this local TCS context.
Neighborhood span822 010-823 805 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
822 010 nt823 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DVB78_RS03520GCF_003342655#DVB78_RS03520
HKClassic
822 010-823 083 nt · Reverse (-)
DVB78_RS03525GCF_003342655#DVB78_RS03525
RROmpRCurrent focus
823 083-823 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003342655#DVB78_RS03525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888098
Simplified PFAM architecture for RROC_0888098
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0888098
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_003342655#DVB78_RS03525
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_003342655#DVB78_RS03525 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_003342655
AssemblyASM334265v1 · Complete Genomehaploid
Genome composition2 311 020 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key