1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:4.2e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DVB16_RS19490
Response regulator OmpR family
Clostridioides difficile · GCF_003327205
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003327205#DVB16_RS19490Stable P2CS identifier used across views.
GenomeGCF_003327205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.29e-29:232:77:77- Raw architecture: Response_reg:9:4.2e-31:118:111:111#Trans_reg_C:156:2.29e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003327205::NZ_QOBZ01000151.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span527-2685Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003327205::NZ_QOBZ01000151.1::G00056Context members
DVB16_RS19485DVB16_RS19490
Partner locus tags
DVB16_RS19485DVB16_RS19490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021387635.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P4DAE0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P4DAE0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDVB16_RS19490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QOBZ01000151.1Sequence record reported by the local genomic context database.
Genomic interval1 978-2 685 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span527-2 685 ntGCF_003327205::NZ_QOBZ01000151.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003327205::NZ_QOBZ01000151.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QOBZ01000151.1All displayed genes belong to this local TCS context.
Neighborhood span527-2 685 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
527 nt2 685 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DVB16_RS19485GCF_003327205#DVB16_RS19485
HKClassic
527-1 933 nt · Reverse (-)
DVB16_RS19490GCF_003327205#DVB16_RS19490
RROmpRCurrent focus
1 978-2 685 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS03680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017059
Simplified PFAM architecture for RROC_1017059
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1017059
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS03680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003327205
AssemblyASM332720v1 · Scaffoldhaploid
Genome composition4 267 721 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key