1 Response_reg#1
52-107 aa · 56 aa · 45.2% of protein
Raw token
Response_reg:52:0.0000000018:107:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C7J97_RS09110
Response regulator, CheY family
Faecalibacterium prausnitzii · GCF_003324185
ClassRRTypeCheYLength124 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003324185#C7J97_RS09110Stable P2CS identifier used across views.
GenomeGCF_003324185Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length124 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage56 / 124 aa (45.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa124 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:52:0.0000000018:107:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003324185::NZ_PXUP01000011.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span100542-100916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC7J97_09100RefSeq proteinWP_242983482.1
Context group ID
GCF_003324185::NZ_PXUP01000011.1::G00006Context members
C7J97_RS09110
Partner locus tags
C7J97_RS09110
Partner old locus tags
C7J97_09100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242983482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC7J97_RS09110Primary locus identifier stored in the genes table.
Old locus tagC7J97_09100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PXUP01000011.1Sequence record reported by the local genomic context database.
Genomic interval100 542-100 916 nt375 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 542-100 916 ntGCF_003324185::NZ_PXUP01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003324185::NZ_PXUP01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PXUP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span100 542-100 916 nt375 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 542 nt100 916 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C7J97_RS09110GCF_003324185#C7J97_RS09110
RRCheYCurrent focus
100 542-100 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003324185#C7J97_RS09110The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2383564
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003324185#C7J97_RS09110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003324185
AssemblyASM332418v1 · Contighaploid
Genome composition3 031 166 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key